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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
36
ATAC-seq
27
DNase-seq
1
FAIRE-seq
Assay category
192
DNA binding
64
DNA accessibility
Target of assay
187
histone
187
histone modification
100
broad histone mark
87
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
127
May, 2021
47
June, 2019
46
September, 2018
August, 2017
21
October, 2019
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
558
bigWig
542
bam
342
fastq
270
tsv
256
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
84
bigBed narrowPeak
37
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
256
Homo sapiens
Biosample type
860
tissue
256
primary cell
155
cell line
89
in vitro differentiated cells
2
stem cell
Organ
85
epithelium
51
pancreas
22
kidney
17
connective tissue
17
vasculature
15
blood vessel
13
vein
9
musculature of body
6
heart
6
liver
5
brain
3
eye
Project
172
AMP
84
T1D
Genome assembly (visualization)
249
hg19
225
GRCh38
Lab
142
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
August, 2017
November, 2017
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
4
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