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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
Assay category
213
DNA binding
Target of assay
213
histone
213
histone modification
110
broad histone mark
103
narrow histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
114
May, 2021
32
September, 2018
26
August, 2017
19
June, 2019
16
October, 2019
3
August, 2021
May, 2019
3
November, 2017
Available data
227
bigWig
213
bed narrowPeak
200
bam
98
tagAlign
73
fastq
44
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
3
bed bed3+
Organism
213
Homo sapiens
Biosample type
430
tissue
213
primary cell
78
in vitro differentiated cells
35
cell line
2
stem cell
Organ
58
epithelium
46
pancreas
12
vasculature
11
blood vessel
10
vein
8
connective tissue
8
musculature of body
7
kidney
3
brain
3
liver
2
heart
1
eye
Project
129
AMP
84
T1D
Genome assembly (visualization)
213
hg19
183
GRCh38
Lab
114
Kyle Gaulton, UCSD
99
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2019
May, 2022
BIOSAMPLE
ASSAY
213 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
skeletal muscle myoblast
12
pancreatic endocrine cell
11
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