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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
39
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
213
DNA binding
69
DNA accessibility
Target of assay
213
histone
213
histone modification
112
broad histone mark
101
narrow histone mark
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
46
September, 2018
43
June, 2019
31
August, 2017
21
October, 2019
5
September, 2017
3
August, 2021
3
May, 2019
November, 2017
2
November, 2020
1
February, 2021
Available data
597
bigWig
593
bam
398
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
282
Homo sapiens
Biosample type
900
tissue
282
primary cell
126
in vitro differentiated cells
124
cell line
2
stem cell
Organ
99
epithelium
68
pancreas
20
kidney
17
vasculature
16
connective tissue
15
blood vessel
13
vein
9
musculature of body
6
liver
5
brain
5
heart
2
eye
Project
198
AMP
84
T1D
Genome assembly (visualization)
275
hg19
249
GRCh38
Lab
168
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
22
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2017
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
skeletal muscle myoblast
12
2
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