Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 226ChIP-seq
  • 39ATAC-seq
  • 29DNase-seq
  • 1FAIRE-seq
Assay category
  • 226DNA binding
  • 69DNA accessibility
Target of assay
  • 216histone
  • 216histone modification
  • 112broad histone mark
  • 104narrow histone mark
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 127May, 2021
  • 47June, 2019
  • 46September, 2018
  • 33August, 2017
  • 21October, 2019
  • 6November, 2017
  • 5September, 2017
  • 4May, 2019
  • 3August, 2021
  • 2November, 2020
  • 1February, 2021
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 295Homo sapiens
Biosample type
  • 984tissue
  • 404cell line
  • 295primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 106epithelium
  • 68pancreas
  • 22kidney
  • 21vasculature
  • 17blood vessel
  • 17connective tissue
  • 13vein
  • 11brain
  • 9musculature of body
  • 6heart
  • 6liver
  • 3eye
Project
  • 211AMP
  • 84T1D
Genome assembly (visualization)
  • 288hg19
  • 261GRCh38
Lab
  • 181AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
Audit category:
  • 25inconsistent ontology term
Audit category:
  • 32missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

295 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte8413
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego