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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
8
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
247
DNA binding
108
DNA accessibility
8
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
23
October, 2019
22
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
617
Homo sapiens
Biosample type
1776
tissue
617
primary cell
524
cell line
266
in vitro differentiated cells
3
stem cell
Organ
235
epithelium
195
pancreas
32
connective tissue
30
vasculature
28
kidney
25
blood vessel
20
brain
16
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
424
AMP
180
T1D
13
HPAP
Genome assembly (visualization)
600
hg19
519
GRCh38
Lab
389
AMP-T2D consortium
215
Kyle Gaulton, UCSD
13
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
617 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
1
pancreatic beta cell
7
10
12
10
1
CD8-positive, alpha-beta T cell
33
4
2
pancreatic ductal cell
13
4
10
4
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