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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
10
ChIP-seq
Assay category
28
DNA accessibility
10
DNA binding
Target of assay
5
RNA binding protein
5
histone
5
histone modification
5
transcription factor
3
narrow histone mark
2
broad histone mark
1
chromatin remodeller
Date released
24
June, 2019
6
November, 2017
4
October, 2019
3
August, 2017
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
38
Homo sapiens
Biosample type
176
tissue
48
cell line
38
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
38
AMP
Genome assembly (visualization)
34
GRCh38
31
hg19
Lab
38
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
tagAlign
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
38 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
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