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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
28
DNase-seq
21
snATAC-seq
5
ChIP-seq
Assay category
88
DNA accessibility
52
Transcription
41
DNA methylation
5
DNA binding
Target of assay
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
24
June, 2019
19
September, 2020
3
August, 2017
3
November, 2017
2
October, 2019
1
November, 2020
Available data
406
bam
376
bigWig
329
fastq
270
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
186
Homo sapiens
Biosample type
186
primary cell
176
tissue
45
cell line
1
in vitro differentiated cells
Organ
98
epithelium
80
pancreas
10
kidney
8
brain
8
vasculature
6
connective tissue
5
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
Project
153
HPAP
33
AMP
Genome assembly (visualization)
31
GRCh38
26
hg19
Lab
153
Klaus Kaestner, Upenn
33
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
August, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
186 results
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single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
cardiac fibroblast
3
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