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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
DNase-seq
21
ChIP-seq
Assay category
22
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
19
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
Available data
581
bigWig
573
bam
406
fastq
278
bed narrowPeak
255
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
43
Homo sapiens
Biosample type
174
tissue
59
cell line
43
primary cell
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
43
AMP
Genome assembly (visualization)
39
GRCh38
37
hg19
Lab
43
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Xin Sun, UCSD
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
43 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
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