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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
20
ChIP-seq
Assay category
28
DNA accessibility
20
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
chromatin remodeller
Date released
24
June, 2019
13
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
590
bam
587
bigWig
367
fastq
294
bed narrowPeak
252
tsv
134
zippedFastqFolder
108
bigBed narrowPeak
100
tagAlign
48
bed broadPeak
48
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
48
Homo sapiens
Biosample type
176
tissue
55
cell line
48
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
3
heart
2
liver
1
eye
1
musculature of body
Project
48
AMP
Genome assembly (visualization)
44
GRCh38
41
hg19
Lab
48
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
July, 2019
September, 2020
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
48 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
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