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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
DNase-seq
5
ChIP-seq
Assay category
28
DNA accessibility
5
DNA binding
Target of assay
16
histone
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
3
August, 2017
3
November, 2017
2
October, 2019
1
November, 2020
Available data
341
bam
336
fastq
326
bigWig
218
tsv
153
zippedFastqFolder
66
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
32
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
33
Homo sapiens
Biosample type
176
tissue
45
cell line
33
primary cell
1
in vitro differentiated cells
Organ
18
epithelium
10
kidney
8
brain
8
vasculature
6
connective tissue
5
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
Project
33
AMP
Genome assembly (visualization)
31
GRCh38
26
hg19
Lab
33
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
month_released!
March, 2019
May, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
33 results
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DNase-seq
ChIP-seq
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
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