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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
DNase-seq
6
ChIP-seq
Assay category
7
DNA accessibility
6
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
5
June, 2019
4
November, 2017
4
October, 2019
Available data
43
bam
38
bigWig
30
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
13
Homo sapiens
Biosample type
35
tissue
13
primary cell
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
4
vein
heart
2
liver
1
eye
1
musculature of body
Project
13
AMP
Genome assembly (visualization)
12
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
13 results
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DNase-seq
ChIP-seq
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
kidney capillary endothelial cell
1
skeletal muscle cell
1
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