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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
22
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
57
DNA binding
25
DNA accessibility
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
23
June, 2019
19
August, 2017
14
September, 2018
11
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
Available data
562
bigWig
561
bam
320
fastq
295
bed narrowPeak
222
tsv
134
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
82
Homo sapiens
Biosample type
385
tissue
354
cell line
82
primary cell
17
in vitro differentiated cells
Organ
45
epithelium
22
pancreas
15
vasculature
13
blood vessel
11
vein
9
connective tissue
8
musculature of body
6
brain
6
kidney
3
heart
2
eye
Project
82
AMP
Genome assembly (visualization)
82
hg19
78
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed bed3+
month_released!
July, 2018
September, 2020
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
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