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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
74
ChIP-seq
32
ATAC-seq
29
DNase-seq
27
snATAC-seq
6
WGBS
1
FAIRE-seq
1
RRBS
Assay category
248
Transcription
89
DNA accessibility
74
DNA binding
7
DNA methylation
Target of assay
105
histone
105
histone modification
narrow histone mark
48
broad histone mark
16
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
58
September, 2018
48
July, 2018
45
February, 2021
41
September, 2020
38
April, 2018
37
August, 2017
36
June, 2019
8
October, 2019
7
August, 2020
6
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
3
May, 2019
2
October, 2018
1
November, 2018
1
November, 2020
Available data
506
bam
501
bigWig
369
fastq
270
tsv
191
bed narrowPeak
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
418
Homo sapiens
Biosample type
673
tissue
424
cell line
418
primary cell
110
in vitro differentiated cells
3
stem cell
Organ
244
epithelium
227
pancreas
16
vasculature
14
connective tissue
14
kidney
12
blood vessel
11
brain
8
vein
5
musculature of body
4
heart
2
eye
2
liver
Project
249
AMP
169
HPAP
Genome assembly (visualization)
236
GRCh38
228
hg19
Lab
249
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Audit category:
27
audit script error
21
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
May, 2022
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
418 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
FAIRE-seq
RRBS
primary cell
pancreatic alpha cell
12
52
9
13
6
Langerhans cell
34
27
pancreatic beta cell
12
21
9
10
exocrine cell
39
pancreatic ductal cell
9
4
6
4
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