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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
128
single cell RNA-seq
120
total RNA-seq
32
ATAC-seq
29
DNase-seq
27
snATAC-seq
6
WGBS
1
FAIRE-seq
1
RRBS
Assay category
248
Transcription
131
DNA binding
89
DNA accessibility
7
DNA methylation
Target of assay
105
histone
105
histone modification
57
narrow histone mark
48
broad histone mark
16
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
73
September, 2018
59
August, 2017
48
July, 2018
47
June, 2019
45
February, 2021
41
September, 2020
38
April, 2018
13
October, 2019
9
November, 2017
7
August, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
475
Homo sapiens
Biosample type
800
tissue
475
primary cell
435
cell line
143
in vitro differentiated cells
4
stem cell
Organ
273
epithelium
258
pancreas
23
vasculature
18
blood vessel
18
connective tissue
16
kidney
14
brain
13
vein
9
musculature of body
6
heart
3
eye
2
liver
Project
306
AMP
169
HPAP
Genome assembly (visualization)
293
GRCh38
285
hg19
Lab
306
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Audit category:
30
inconsistent ontology term
27
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2017
BIOSAMPLE
ASSAY
475 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
FAIRE-seq
RRBS
primary cell
pancreatic alpha cell
13
12
52
13
6
Langerhans cell
34
27
pancreatic beta cell
13
12
21
10
exocrine cell
39
pancreatic ductal cell
13
9
4
4
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