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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
52
single cell RNA-seq
46
ChIP-seq
41
WGBS
29
DNase-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
112
DNA accessibility
52
Transcription
46
DNA binding
41
DNA methylation
Target of assay
36
histone
36
histone modification
21
narrow histone mark
15
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
47
June, 2019
19
September, 2020
14
September, 2018
13
October, 2019
8
August, 2017
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
251
Homo sapiens
Biosample type
504
tissue
346
cell line
251
primary cell
17
in vitro differentiated cells
Organ
141
epithelium
102
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
153
HPAP
98
AMP
Genome assembly (visualization)
94
GRCh38
91
hg19
Lab
153
Klaus Kaestner, Upenn
98
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
251 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
9
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