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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
DNase-seq
22
ATAC-seq
10
ChIP-seq
1
FAIRE-seq
Assay category
52
DNA accessibility
10
DNA binding
Target of assay
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
28
June, 2019
14
September, 2018
7
August, 2017
5
September, 2017
3
November, 2017
3
October, 2019
1
May, 2019
1
November, 2020
Available data
406
bam
373
bigWig
264
tsv
167
fastq
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
2
tagAlign
1
bed bed3
1
bedpe bed3+
1
tar
Organism
62
Homo sapiens
Biosample type
335
cell line
249
tissue
62
primary cell
5
in vitro differentiated cells
Organ
44
epithelium
22
pancreas
12
kidney
9
vasculature
8
brain
7
connective tissue
6
blood vessel
4
heart
3
vein
2
eye
2
liver
1
musculature of body
Project
62
AMP
Genome assembly (visualization)
58
GRCh38
55
hg19
Lab
62
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
histone
BIOSAMPLE
ASSAY
62 results
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DNase-seq
ATAC-seq
ChIP-seq
FAIRE-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
cardiac fibroblast
3
1
pancreatic ductal cell
4
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