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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
29
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
53
DNA binding
52
DNA accessibility
Target of assay
44
histone
44
histone modification
25
narrow histone mark
19
broad histone mark
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
May, 2019
1
November, 2020
Available data
609
bigWig
604
bam
409
fastq
291
bed narrowPeak
270
tsv
153
zippedFastqFolder
105
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
105
Homo sapiens
Biosample type
468
tissue
355
cell line
105
primary cell
17
in vitro differentiated cells
Organ
57
epithelium
22
pancreas
21
vasculature
17
blood vessel
15
connective tissue
13
vein
12
kidney
11
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
105
AMP
Genome assembly (visualization)
101
GRCh38
98
hg19
Lab
105
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
May, 2019
May, 2023
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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