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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
26
DNase-seq
3
ATAC-seq
Assay category
37
DNA binding
29
DNA accessibility
Target of assay
31
histone
31
histone modification
17
narrow histone mark
14
broad histone mark
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
47
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
92
bam
92
bigWig
80
bed narrowPeak
66
bigBed narrowPeak
45
fastq
38
bed broadPeak
38
bigBed broadPeak
24
bed bed3+
11
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
66
Homo sapiens
Biosample type
185
tissue
66
primary cell
1
in vitro differentiated cells
Organ
21
epithelium
14
connective tissue
12
kidney
9
musculature of body
6
heart
5
brain
4
vasculature
3
eye
3
pancreas
2
blood vessel
2
liver
Project
66
AMP
Genome assembly (visualization)
63
GRCh38
59
hg19
Lab
66
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
skeletal muscle myoblast
14
2
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
cardiac muscle cell
2
1
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