Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 57ChIP-seq
  • 29DNase-seq
  • 22ATAC-seq
  • 1FAIRE-seq
Assay category
  • 57DNA binding
  • 52DNA accessibility
Target of assay
  • 47histone
  • 47histone modification
  • 26narrow histone mark
  • 21broad histone mark
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 47June, 2019
  • 19August, 2017
  • 14September, 2018
  • 13October, 2019
  • 6November, 2017
  • 5September, 2017
  • 4May, 2019
  • 1November, 2020
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 109Homo sapiens
Biosample type
  • 561tissue
  • 355cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 61epithelium
  • 22pancreas
  • 21vasculature
  • 17blood vessel
  • 16kidney
  • 15connective tissue
  • 13vein
  • 11brain
  • 9musculature of body
  • 6heart
  • 3eye
  • 2liver
Project
  • 109AMP
Genome assembly (visualization)
  • 105GRCh38
  • 102hg19
Lab
  • 109AMP-T2D consortium
Audit category:
  • 23inconsistent ontology term
Audit category:
  • 2inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

109 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego