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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
4
Hi-C
2
small RNA-seq
1
DNase-seq
1
FAIRE-seq
Assay category
254
Transcription
226
DNA binding
80
DNA accessibility
4
3D chromatin structure
Target of assay
214
histone
214
histone modification
110
broad histone mark
104
narrow histone mark
10
control
5
RNA binding protein
5
transcription factor
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
43
April, 2018
32
August, 2017
23
June, 2019
22
July, 2019
19
October, 2019
7
August, 2020
5
December, 2019
5
September, 2017
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
November, 2017
3
September, 2020
2
February, 2021
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
564
Homo sapiens
Biosample type
1596
tissue
564
primary cell
463
cell line
258
in vitro differentiated cells
3
stem cell
Organ
209
epithelium
192
pancreas
26
connective tissue
18
kidney
17
vasculature
16
blood vessel
11
vein
10
musculature of body
9
brain
9
liver
7
heart
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
374
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
554
hg19
474
GRCh38
Lab
339
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
csv
files.file_type!!
csv
BIOSAMPLE
ASSAY
564 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
small RNA-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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