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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
25
DNase-seq
2
Hi-C
2
small RNA-seq
Assay category
252
Transcription
232
DNA binding
103
DNA accessibility
2
3D chromatin structure
Target of assay
217
histone
217
histone modification
111
broad histone mark
106
narrow histone mark
9
RNA binding protein
9
control
9
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
45
June, 2019
43
April, 2018
18
July, 2019
8
October, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
589
bigWig
582
bam
406
fastq
278
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
92
bigBed narrowPeak
41
bed broadPeak
41
bigBed broadPeak
31
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
589
Homo sapiens
Biosample type
1702
tissue
589
primary cell
466
cell line
259
in vitro differentiated cells
3
stem cell
Organ
231
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
blood vessel
20
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
399
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
573
hg19
501
GRCh38
Lab
364
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
hic
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
589 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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