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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
68
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
244
DNA binding
98
DNA accessibility
4
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
June, 2019
46
August, 2017
43
April, 2018
23
October, 2019
22
July, 2019
9
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
August, 2021
3
June, 2018
2
February, 2021
2
October, 2018
Available data
605
bam
600
bigWig
292
bed narrowPeak
264
tsv
240
fastq
109
bigBed narrowPeak
96
tagAlign
49
bed broadPeak
49
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
600
Homo sapiens
Biosample type
1772
tissue
600
primary cell
500
cell line
237
in vitro differentiated cells
3
stem cell
Organ
218
epithelium
182
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
15
vein
11
musculature of body
10
heart
8
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
420
AMP
180
T1D
Genome assembly (visualization)
593
hg19
506
GRCh38
Lab
385
AMP-T2D consortium
215
Kyle Gaulton, UCSD
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
ibed
lab.title!
Klaus Kaestner, Upenn
month_released!
August, 2021
BIOSAMPLE
ASSAY
600 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
pancreatic alpha cell
7
10
12
6
pancreatic ductal cell
13
4
10
4
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