Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
148
ChIP-seq
100
single cell RNA-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
254
Transcription
148
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
132
histone
132
histone modification
67
broad histone mark
65
narrow histone mark
10
RNA binding protein
10
transcription factor
9
control
1
chromatin remodeller
Date released
90
May, 2020
87
May, 2021
72
September, 2018
48
July, 2018
47
June, 2019
43
April, 2018
34
August, 2017
23
October, 2019
22
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
514
Homo sapiens
Biosample type
1628
tissue
514
primary cell
505
cell line
241
in vitro differentiated cells
3
stem cell
Organ
228
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
15
vein
11
musculature of body
10
heart
8
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
408
AMP
96
T1D
10
HPAP
Genome assembly (visualization)
497
hg19
421
GRCh38
Lab
373
AMP-T2D consortium
131
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tagAlign
lab.title!
Mark McCarthy, Oxford
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
514 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
53
2
pancreatic alpha cell
10
7
12
13
CD8-positive, alpha-beta T cell
4
33
2
pancreatic beta cell
10
7
12
10
pancreatic ductal cell
4
13
10
4
+ See 73 more…
See all biosamples
Download