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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
single cell RNA-seq
58
ChIP-seq
32
ATAC-seq
28
total RNA-seq
Assay category
102
Transcription
58
DNA binding
32
DNA accessibility
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
Date released
72
September, 2018
37
July, 2018
33
April, 2018
29
August, 2017
7
August, 2020
5
September, 2017
3
August, 2018
3
September, 2020
2
October, 2018
1
June, 2018
Available data
258
fastq
194
bam
192
bigWig
108
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
0
xls
Organism
192
Homo sapiens
Biosample type
369
tissue
192
primary cell
56
cell line
2
in vitro differentiated cells
Organ
231
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
182
AMP
10
HPAP
Genome assembly (visualization)
192
GRCh38
182
hg19
Lab
182
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
192 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
primary cell
pancreatic alpha cell
12
7
13
10
pancreatic beta cell
12
7
10
10
pancreatic ductal cell
10
13
4
4
pancreatic acinar cell
12
8
5
4
pancreatic endocrine cell
23
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