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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
152
total RNA-seq
97
single cell RNA-seq
78
ATAC-seq
24
DNase-seq
2
small RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
251
Transcription
238
DNA binding
103
DNA accessibility
1
3D chromatin structure
Target of assay
227
histone
227
histone modification
118
broad histone mark
109
narrow histone mark
7
RNA binding protein
7
transcription factor
4
control
1
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
46
August, 2017
43
April, 2018
42
June, 2019
23
October, 2019
16
July, 2019
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
593
bigWig
592
bam
400
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
593
Homo sapiens
Biosample type
1570
tissue
593
primary cell
522
cell line
259
in vitro differentiated cells
3
stem cell
Organ
231
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
403
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
576
hg19
505
GRCh38
Lab
368
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
38
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
organ_slims!
brain
BIOSAMPLE
ASSAY
593 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
FAIRE-seq
Hi-C
primary cell
monocyte
84
53
2
pancreatic alpha cell
7
10
12
13
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
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