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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
210
ChIP-seq
126
total RNA-seq
100
single cell RNA-seq
64
ATAC-seq
29
DNase-seq
4
Hi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
228
Transcription
210
DNA binding
94
DNA accessibility
4
3D chromatin structure
Target of assay
195
histone
195
histone modification
99
broad histone mark
96
narrow histone mark
10
control
9
RNA binding protein
9
transcription factor
chromatin remodeller
Date released
171
May, 2021
90
May, 2020
September, 2018
48
July, 2018
47
June, 2019
45
August, 2017
43
April, 2018
23
October, 2019
22
July, 2019
9
November, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
Available data
536
bigWig
531
bam
335
fastq
244
bed narrowPeak
244
tsv
153
zippedFastqFolder
100
tagAlign
90
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
csv
1
tar
Organism
536
Homo sapiens
Biosample type
1677
tissue
536
primary cell
492
cell line
256
in vitro differentiated cells
3
stem cell
Organ
166
epithelium
120
pancreas
32
connective tissue
29
vasculature
24
blood vessel
24
kidney
20
brain
15
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
346
AMP
180
T1D
10
HPAP
Genome assembly (visualization)
519
hg19
442
GRCh38
Lab
311
AMP-T2D consortium
215
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
May, 2019
September, 2018
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
536 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
2
CD8-positive, alpha-beta T cell
33
4
2
pancreatic alpha cell
7
12
10
pancreatic beta cell
7
12
6
skeletal muscle myoblast
14
1
2
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