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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
74
ChIP-seq
27
snATAC-seq
10
ATAC-seq
6
WGBS
1
RRBS
Assay category
248
Transcription
74
DNA binding
37
DNA accessibility
7
DNA methylation
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
16
control
Date released
76
February, 2023
59
September, 2018
48
July, 2018
45
February, 2021
41
September, 2020
40
August, 2017
38
April, 2018
7
August, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
366
Homo sapiens
Biosample type
366
primary cell
232
tissue
126
in vitro differentiated cells
80
cell line
4
stem cell
Organ
236
pancreas
212
epithelium
3
brain
3
connective tissue
2
vasculature
1
blood vessel
Project
197
AMP
169
HPAP
Genome assembly (visualization)
188
GRCh38
183
hg19
Lab
197
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bigBed narrowPeak
month_released!
May, 2022
month_released!!
May, 2022
BIOSAMPLE
ASSAY
366 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
RRBS
primary cell
pancreatic alpha cell
12
52
13
7
6
Langerhans cell
34
27
pancreatic beta cell
12
21
13
3
exocrine cell
39
pancreatic ductal cell
9
4
13
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