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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
single cell RNA-seq
120
total RNA-seq
54
ChIP-seq
32
ATAC-seq
27
snATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
246
Transcription
60
DNA accessibility
54
DNA binding
7
DNA methylation
Target of assay
73
histone
73
histone modification
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
57
September, 2018
48
July, 2018
45
February, 2021
41
September, 2020
38
April, 2018
36
August, 2017
7
August, 2020
6
November, 2017
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
Available data
416
bam
411
bigWig
369
fastq
225
tsv
191
bed narrowPeak
153
zippedFastqFolder
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
csv
1
bed bed3
1
tar
Organism
367
Homo sapiens
Biosample type
419
cell line
367
primary cell
349
tissue
108
in vitro differentiated cells
3
stem cell
Organ
227
pancreas
217
epithelium
6
brain
4
vasculature
3
connective tissue
2
blood vessel
Project
198
AMP
169
HPAP
Genome assembly (visualization)
189
GRCh38
186
hg19
Lab
198
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
csv
month_released!
May, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
367 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
9
13
6
Langerhans cell
34
27
pancreatic beta cell
12
21
9
10
exocrine cell
39
pancreatic ductal cell
9
4
6
4
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