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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
70
ChIP-seq
69
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
150
Transcription
70
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
28
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
258
fastq
194
bam
192
bigWig
108
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
258
Homo sapiens
Biosample type
258
primary cell
213
tissue
Organ
258
pancreas
238
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
189
AMP
69
HPAP
Genome assembly (visualization)
187
GRCh38
177
hg19
Lab
189
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
ibed
BIOSAMPLE
ASSAY
258 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
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