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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
single cell RNA-seq
120
total RNA-seq
88
ChIP-seq
32
ATAC-seq
27
snATAC-seq
6
WGBS
1
DNase-seq
1
RRBS
Assay category
248
Transcription
88
DNA binding
60
DNA accessibility
7
DNA methylation
Target of assay
71
histone
71
histone modification
38
narrow histone mark
33
broad histone mark
14
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
73
September, 2018
58
August, 2017
48
July, 2018
45
February, 2021
41
September, 2020
38
April, 2018
7
August, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
584
bigWig
577
bam
403
fastq
274
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
403
Homo sapiens
Biosample type
403
primary cell
399
cell line
370
tissue
141
in vitro differentiated cells
4
stem cell
Organ
258
pancreas
238
epithelium
9
brain
vasculature
3
blood vessel
3
connective tissue
Project
234
AMP
169
HPAP
Genome assembly (visualization)
225
GRCh38
220
hg19
Lab
234
AMP-T2D consortium
169
Klaus Kaestner, Upenn
Audit category:
27
audit script error
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2018
organ_slims!
ovary
vasculature
BIOSAMPLE
ASSAY
403 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell
12
52
13
13
6
Langerhans cell
34
27
pancreatic beta cell
12
21
13
10
exocrine cell
39
pancreatic ductal cell
9
4
13
4
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