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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128single cell RNA-seq
  • 120total RNA-seq
  • 94ChIP-seq
  • 32ATAC-seq
  • 27snATAC-seq
  • 6WGBS
  • 1DNase-seq
  • 1RRBS
Assay category
  • 248Transcription
  • 94DNA binding
  • 60DNA accessibility
  • 7DNA methylation
Target of assay
  • 73histone
  • 73histone modification
  • 40narrow histone mark
  • 33broad histone mark
  • 16control
  • 5RNA binding protein
  • 5transcription factor
  • 1chromatin remodeller
Date released
  • 76February, 2023
  • 73September, 2018
  • 58August, 2017
  • 48July, 2018
  • 45February, 2021
  • 41September, 2020
  • 38April, 2018
  • 9November, 2017
  • 7August, 2020
  • 5September, 2017
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1November, 2018
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 409Homo sapiens
Biosample type
  • 427cell line
  • 409primary cell
  • 377tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 258pancreas
  • 238epithelium
  • 9brain
  • 6vasculature
  • 3blood vessel
  • 3connective tissue
Project
  • 240AMP
  • 169HPAP
Genome assembly (visualization)
  • 229GRCh38
  • 226hg19
Lab
  • 240AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
Audit category:
  • 27audit script error
  • 7inconsistent ontology term
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

409 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
primary cell
pancreatic alpha cell125213136
Langerhans cell3427
pancreatic beta cell12211310
exocrine cell39
pancreatic ductal cell94134
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