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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
6
Hi-C
Assay category
89
DNA binding
6
3D chromatin structure
Target of assay
87
histone
87
histone modification
45
broad histone mark
42
narrow histone mark
2
control
Date released
84
May, 2021
4
August, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
October, 2019
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
95
Homo sapiens
Biosample type
214
tissue
95
primary cell
44
in vitro differentiated cells
11
cell line
Organ
9
epithelium
4
liver
3
pancreas
2
blood vessel
2
vasculature
2
vein
Project
84
T1D
7
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
93
hg19
88
GRCh38
Lab
84
Kyle Gaulton, UCSD
7
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
files.file_type!
bed broadPeak
month_released!
January, 2018
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
Hi-C
primary cell
monocyte
84
hepatocyte
4
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
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