Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
100
ChIP-seq
100
single cell RNA-seq
12
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
252
Transcription
100
DNA binding
12
DNA accessibility
6
DNA methylation
Target of assay
98
histone
98
histone modification
51
broad histone mark
47
narrow histone mark
5
control
Date released
136
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
12
August, 2017
12
February, 2023
7
February, 2021
5
December, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
Available data
598
bigWig
589
bam
409
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
370
Homo sapiens
Biosample type
1314
tissue
370
primary cell
171
in vitro differentiated cells
139
cell line
4
stem cell
Organ
120
epithelium
108
pancreas
15
connective tissue
9
liver
6
kidney
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
184
AMP
180
T1D
6
HPAP
Genome assembly (visualization)
351
hg19
350
GRCh38
Lab
184
AMP-T2D consortium
180
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed bedMethyl
organ_slims!
vein
BIOSAMPLE
ASSAY
370 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte
53
84
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
+ See 60 more…
See all biosamples
Download