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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
93
total RNA-seq
12
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
195
Transcription
12
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
18
July, 2019
12
February, 2023
7
February, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
2
October, 2019
Available data
448
bam
424
bigWig
402
fastq
213
tsv
162
bed narrowPeak
153
zippedFastqFolder
107
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
29
bed bed3+
12
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
213
Homo sapiens
Biosample type
884
tissue
213
primary cell
100
cell line
52
in vitro differentiated cells
4
stem cell
Organ
116
epithelium
108
pancreas
15
connective tissue
6
kidney
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
162
AMP
45
T1D
6
HPAP
Genome assembly (visualization)
195
GRCh38
195
hg19
Lab
162
AMP-T2D consortium
45
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
month_released!
August, 2020
May, 2021
organ_slims!
liver
BIOSAMPLE
ASSAY
213 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
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