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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 150total RNA-seq
  • 100single cell RNA-seq
  • 12ATAC-seq
  • 6WGBS
  • 2small RNA-seq
Assay category
  • 252Transcription
  • 12DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 52May, 2021
  • 48July, 2018
  • 45May, 2020
  • 43April, 2018
  • 26September, 2018
  • 18July, 2019
  • 12February, 2023
  • 7February, 2021
  • 5December, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 2October, 2019
Available data
  • 613bigWig
  • 609bam
  • 409fastq
  • 295bed narrowPeak
  • 270tsv
  • 153zippedFastqFolder
  • 109bigBed narrowPeak
  • 100tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 37bed bed3+
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 270Homo sapiens
Biosample type
  • 1076tissue
  • 270primary cell
  • 131in vitro differentiated cells
  • 119cell line
  • 4stem cell
Organ
  • 116epithelium
  • 108pancreas
  • 15connective tissue
  • 6kidney
  • 5liver
  • 4heart
  • 3brain
  • 2adipose tissue
  • 2artery
  • 2blood vessel
  • 2musculature of body
  • 2vasculature
  • 1pericardium
Project
  • 168AMP
  • 96T1D
  • 6HPAP
Genome assembly (visualization)
  • 252GRCh38
  • 252hg19
Lab
  • 168AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 17inconsistent ontology term
BIOSAMPLE
ASSAY

270 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
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