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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
234
ChIP-seq
219
total RNA-seq
186
ATAC-seq
160
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
381
Transcription
273
DNA accessibility
234
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
192
histone
192
histone modification
101
broad histone mark
91
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
55
June, 2019
48
February, 2021
45
August, 2017
43
April, 2018
34
October, 2019
31
July, 2019
23
July, 2018
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
2
August, 2018
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
498
bigWig
494
bam
294
fastq
247
bed narrowPeak
215
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
973
Homo sapiens
Biosample type
2574
tissue
973
primary cell
435
cell line
377
in vitro differentiated cells
10
stem cell
Organ
328
epithelium
241
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
444
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
513
hg19
422
GRCh38
Lab
409
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
4
inconsistent control read length
1
inconsistent assembly
files.platform.term_name!
Illumina HiSeq 2000
BIOSAMPLE
ASSAY
973 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
42
32
11
31
1
pancreatic beta cell
13
11
19
10
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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