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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
28
total RNA-seq
27
single cell RNA-seq
14
ATAC-seq
1
DNase-seq
Assay category
55
Transcription
45
DNA binding
15
DNA accessibility
Target of assay
45
histone
45
histone modification
24
narrow histone mark
21
broad histone mark
Date released
72
September, 2018
25
July, 2018
14
August, 2017
2
October, 2018
1
August, 2018
1
June, 2018
Available data
115
bam
115
bigWig
115
fastq
55
tsv
48
bed narrowPeak
16
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
115
Homo sapiens
Biosample type
227
cell line
203
tissue
115
primary cell
17
in vitro differentiated cells
Organ
105
pancreas
78
epithelium
2
connective tissue
Project
115
AMP
Genome assembly (visualization)
115
hg19
114
GRCh38
Lab
115
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
primary cell
pancreatic ductal cell
13
4
2
4
pancreatic endocrine cell
23
pancreatic acinar cell
8
4
4
3
pancreatic beta cell
10
2
4
pancreatic alpha cell
10
1
3
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