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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
233
ChIP-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
287
DNA accessibility
233
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
212
histone
212
histone modification
110
broad histone mark
102
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
20
August, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
578
bigWig
562
bam
361
fastq
270
tsv
264
bed narrowPeak
153
zippedFastqFolder
88
bigBed narrowPeak
88
tagAlign
37
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1040
Homo sapiens
Biosample type
2720
tissue
1040
primary cell
549
cell line
350
in vitro differentiated cells
8
stem cell
Organ
378
epithelium
324
pancreas
39
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
511
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
592
hg19
507
GRCh38
Lab
476
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.read_length!
36
BIOSAMPLE
ASSAY
1040 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
2
35
12
31
1
pancreatic beta cell
21
2
23
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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