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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
186
single cell RNA-seq
153
ATAC-seq
47
WGBS
40
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
435
Transcription
279
DNA binding
225
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
95
May, 2022
88
February, 2023
73
September, 2018
58
September, 2020
56
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
34
October, 2019
32
February, 2021
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
605
bigWig
601
bam
385
fastq
287
bed narrowPeak
270
tsv
113
zippedFastqFolder
101
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1024
Homo sapiens
Biosample type
2720
tissue
1024
primary cell
598
cell line
376
in vitro differentiated cells
7
stem cell
Organ
359
epithelium
299
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
551
AMP
268
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
620
hg19
528
GRCh38
Lab
516
AMP-T2D consortium
268
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
15
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.read_length!
50
BIOSAMPLE
ASSAY
1024 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
12
10
31
1
Langerhans cell
84
32
pancreatic beta cell
13
21
12
7
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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