Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 46ChIP-seq
  • 1DNase-seq
  • 1RRBS
Assay category
  • 46DNA binding
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 25histone
  • 25histone modification
  • 16control
  • 13narrow histone mark
  • 12broad histone mark
  • 5RNA binding protein
  • 5transcription factor
  • 1chromatin remodeller
Date released
  • 39August, 2017
  • 9November, 2017
Available data
  • 48fastq
  • 47bam
  • 35bigWig
  • 31bed narrowPeak
  • 21bigBed narrowPeak
  • 20bed broadPeak
  • 20bigBed broadPeak
  • 12tagAlign
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 48Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 48primary cell
  • 44in vitro differentiated cells
  • 2stem cell
Organ
  • 28epithelium
  • 22pancreas
  • 9brain
  • 6vasculature
  • 3blood vessel
Project
  • 48AMP
Genome assembly (visualization)
  • 36hg19
  • 29GRCh38
Lab
  • 48AMP-T2D consortium
Audit category:
  • 2inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

48 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
RRBS
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego