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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 278ChIP-seq
  • 219total RNA-seq
  • 129ATAC-seq
  • 102single cell RNA-seq
  • 30DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 8snATAC-seq
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 323Transcription
  • 278DNA binding
  • 168DNA accessibility
  • 11DNA methylation
  • 103D chromatin structure
Target of assay
  • 236histone
  • 236histone modification
  • 122broad histone mark
  • 114narrow histone mark
  • 35control
  • 10RNA binding protein
  • 10transcription factor
  • 1chromatin remodeller
Date released
  • 206May, 2021
  • 147May, 2020
  • 88February, 2023
  • 55June, 2019
  • 54August, 2017
  • 41July, 2018
  • 36April, 2018
  • 34October, 2019
  • 34September, 2020
  • 32September, 2018
  • 31July, 2019
  • 9November, 2017
  • 8January, 2021
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 4August, 2021
  • 3February, 2021
  • 3October, 2022
  • 2August, 2018
  • 2June, 2018
  • 1March, 2020
  • 1March, 2023
Available data
  • 541bam
  • 535bigWig
  • 271bed narrowPeak
  • 262fastq
  • 220tsv
  • 100tagAlign
  • 85bigBed narrowPeak
  • 48bed broadPeak
  • 48bigBed broadPeak
  • 37bed bed3+
  • 18zippedFastqFolder
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 1bed bed3
  • 1tar
Organism
  • 807Homo sapiens
Biosample type
  • 2575tissue
  • 807primary cell
  • 558cell line
  • 392in vitro differentiated cells
  • 10stem cell
Organ
  • 249epithelium
  • 189pancreas
  • 39connective tissue
  • 37vasculature
  • 36kidney
  • 31blood vessel
  • 22vein
  • 21brain
  • 14liver
  • 14musculature of body
  • 13heart
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 489AMP
  • 204T1D
  • 113HPAP
  • 1ITG
Genome assembly (visualization)
  • 560hg19
  • 459GRCh38
Lab
  • 454AMP-T2D consortium
  • 239Kyle Gaulton, UCSD
  • 113Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 54inconsistent ontology term
  • 4audit script error
Audit category:
  • 44missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

807 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte85541511
pancreatic alpha cell134291
CD8-positive, alpha-beta T cell33421
exocrine cell39
pancreatic beta cell1311101
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