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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
219
total RNA-seq
129
ATAC-seq
102
single cell RNA-seq
30
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
8
snATAC-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
323
Transcription
278
DNA binding
168
DNA accessibility
11
DNA methylation
10
3D chromatin structure
Target of assay
236
histone
236
histone modification
122
broad histone mark
114
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
55
June, 2019
54
August, 2017
41
July, 2018
36
April, 2018
34
October, 2019
34
September, 2020
32
September, 2018
31
July, 2019
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
3
February, 2021
3
October, 2022
2
August, 2018
2
June, 2018
1
March, 2020
1
March, 2023
Available data
541
bam
535
bigWig
271
bed narrowPeak
262
fastq
220
tsv
100
tagAlign
85
bigBed narrowPeak
48
bed broadPeak
48
bigBed broadPeak
37
bed bed3+
18
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
807
Homo sapiens
Biosample type
2575
tissue
807
primary cell
558
cell line
392
in vitro differentiated cells
10
stem cell
Organ
249
epithelium
189
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
489
AMP
204
T1D
113
HPAP
1
ITG
Genome assembly (visualization)
560
hg19
459
GRCh38
Lab
454
AMP-T2D consortium
239
Kyle Gaulton, UCSD
113
Klaus Kaestner, Upenn
1
ITG
Audit category:
54
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
807 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
snATAC-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
42
9
1
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
pancreatic beta cell
13
11
10
1
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