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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 200ATAC-seq
  • 185ChIP-seq
  • 155total RNA-seq
  • 91single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 30DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 9RRBS
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 287DNA accessibility
  • 248Transcription
  • 185DNA binding
  • 57DNA methylation
  • 103D chromatin structure
Target of assay
  • 164histone
  • 164histone modification
  • 89broad histone mark
  • 75narrow histone mark
  • 19control
  • 5RNA binding protein
  • 5transcription factor
Date released
  • 206May, 2021
  • 147May, 2020
  • 134May, 2022
  • 55June, 2019
  • 48February, 2021
  • 41September, 2018
  • 34October, 2019
  • 31July, 2019
  • 24September, 2020
  • 12April, 2018
  • 12February, 2023
  • 8January, 2021
  • 7August, 2020
  • 6July, 2018
  • 6November, 2020
  • 5December, 2019
  • 5May, 2019
  • 5September, 2017
  • 4August, 2017
  • 4August, 2021
  • 3October, 2022
  • 2October, 2018
  • 1August, 2018
  • 1June, 2018
  • 1March, 2020
  • 1March, 2023
  • 1November, 2018
Available data
  • 453bigWig
  • 437bam
  • 228bed narrowPeak
  • 193tsv
  • 143fastq
  • 134zippedFastqFolder
  • 88bigBed narrowPeak
  • 88tagAlign
  • 37bed bed3+
  • 29bed broadPeak
  • 29bigBed broadPeak
  • 9bed bedMethyl
  • 9bigBed bedMethyl
  • 6hic
  • 4bedpe bed3+
  • 4hdf5
  • 3cool
  • 2csv
  • 1bed bed3
  • 1tar
Organism
  • 804Homo sapiens
Biosample type
  • 2602tissue
  • 804primary cell
  • 338cell line
  • 255in vitro differentiated cells
  • 6stem cell
Organ
  • 244epithelium
  • 164pancreas
  • 36connective tissue
  • 36kidney
  • 31vasculature
  • 28blood vessel
  • 22vein
  • 14liver
  • 14musculature of body
  • 13heart
  • 12brain
  • 8blood
  • 8bodily fluid
  • 5eye
  • 2adipose tissue
  • 2artery
  • 1bone element
  • 1bone marrow
  • 1pericardium
Project
  • 386AMP
  • 213HPAP
  • 204T1D
  • 1ITG
Genome assembly (visualization)
  • 467hg19
  • 382GRCh38
Lab
  • 351AMP-T2D consortium
  • 239Kyle Gaulton, UCSD
  • 213Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 47inconsistent ontology term
  • 31audit script error
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

804 results

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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte15855411
Langerhans cell6648
pancreatic alpha cell35102311
pancreatic beta cell23102161
CD8-positive, alpha-beta T cell23341
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