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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
185
ChIP-seq
155
total RNA-seq
91
single cell RNA-seq
56
snATAC-seq
47
WGBS
30
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
287
DNA accessibility
248
Transcription
185
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
55
June, 2019
48
February, 2021
41
September, 2018
34
October, 2019
31
July, 2019
24
September, 2020
12
April, 2018
12
February, 2023
8
January, 2021
7
August, 2020
6
July, 2018
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2017
4
August, 2021
3
October, 2022
2
October, 2018
1
August, 2018
1
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
453
bigWig
437
bam
228
bed narrowPeak
193
tsv
143
fastq
134
zippedFastqFolder
88
bigBed narrowPeak
88
tagAlign
37
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
804
Homo sapiens
Biosample type
2602
tissue
804
primary cell
338
cell line
255
in vitro differentiated cells
6
stem cell
Organ
244
epithelium
164
pancreas
36
connective tissue
36
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
386
AMP
213
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
467
hg19
382
GRCh38
Lab
351
AMP-T2D consortium
239
Kyle Gaulton, UCSD
213
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
files.run_type!
single-ended
BIOSAMPLE
ASSAY
804 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
15
85
54
1
1
Langerhans cell
66
48
pancreatic alpha cell
35
10
2
31
1
pancreatic beta cell
23
10
2
16
1
CD8-positive, alpha-beta T cell
2
33
4
1
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