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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
single cell RNA-seq
71
ATAC-seq
48
snATAC-seq
47
WGBS
28
total RNA-seq
1
ChIP-seq
1
DNase-seq
Assay category
120
DNA accessibility
113
Transcription
47
DNA methylation
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
134
May, 2022
45
February, 2021
41
September, 2018
25
September, 2020
7
April, 2018
7
August, 2020
7
July, 2018
5
August, 2017
5
September, 2017
2
October, 2018
1
August, 2018
1
June, 2018
1
November, 2018
Available data
147
fastq
135
zippedFastqFolder
78
bigWig
68
bam
50
tsv
24
bed narrowPeak
24
bigBed narrowPeak
2
csv
1
bed broadPeak
1
bigBed broadPeak
Organism
281
Homo sapiens
Biosample type
281
primary cell
202
tissue
104
cell line
2
in vitro differentiated cells
Organ
157
epithelium
157
pancreas
Project
211
HPAP
70
AMP
Genome assembly (visualization)
77
GRCh38
68
hg19
Lab
211
Klaus Kaestner, Upenn
70
AMP-T2D consortium
Audit category:
27
audit script error
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
BIOSAMPLE
ASSAY
281 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
total RNA-seq
ChIP-seq
DNase-seq
primary cell
Langerhans cell
67
48
pancreatic alpha cell
3
35
31
10
pancreatic beta cell
2
23
16
10
pancreatic acinar cell
2
9
4
pancreatic ductal cell
2
4
4
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