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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 96single cell RNA-seq
  • 94ChIP-seq
  • 92total RNA-seq
  • 1DNase-seq
  • 1RRBS
Assay category
  • 188Transcription
  • 94DNA binding
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 73histone
  • 73histone modification
  • 40narrow histone mark
  • 33broad histone mark
  • 16control
  • 5RNA binding protein
  • 5transcription factor
  • 1chromatin remodeller
Date released
  • 76February, 2023
  • 55August, 2017
  • 42July, 2018
  • 35September, 2020
  • 32September, 2018
  • 31April, 2018
  • 9November, 2017
  • 2August, 2018
  • 2June, 2018
Available data
  • 266fastq
  • 172bam
  • 160bigWig
  • 77tsv
  • 67bed narrowPeak
  • 21bigBed narrowPeak
  • 20bed broadPeak
  • 20bigBed broadPeak
  • 19zippedFastqFolder
  • 12tagAlign
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 284Homo sapiens
Biosample type
  • 324cell line
  • 284primary cell
  • 175tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 182pancreas
  • 162epithelium
  • 9brain
  • 6vasculature
  • 3blood vessel
  • 3connective tissue
Project
  • 173AMP
  • 111HPAP
Genome assembly (visualization)
  • 161hg19
  • 154GRCh38
Lab
  • 173AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 44missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

284 results

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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell101342
exocrine cell39
pancreatic beta cell101311
pancreatic endocrine cell23
pancreatic ductal cell713
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