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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
single cell RNA-seq
94
ChIP-seq
92
total RNA-seq
1
DNase-seq
1
RRBS
Assay category
188
Transcription
94
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
73
histone
73
histone modification
40
narrow histone mark
33
broad histone mark
16
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
76
February, 2023
55
August, 2017
42
July, 2018
35
September, 2020
32
September, 2018
31
April, 2018
9
November, 2017
2
August, 2018
2
June, 2018
Available data
266
fastq
172
bam
160
bigWig
77
tsv
67
bed narrowPeak
21
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
19
zippedFastqFolder
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
284
Homo sapiens
Biosample type
324
cell line
284
primary cell
175
tissue
139
in vitro differentiated cells
4
stem cell
Organ
182
pancreas
162
epithelium
9
brain
6
vasculature
3
blood vessel
3
connective tissue
Project
173
AMP
111
HPAP
Genome assembly (visualization)
161
hg19
154
GRCh38
Lab
173
AMP-T2D consortium
111
Klaus Kaestner, Upenn
Audit category:
7
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
284 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
DNase-seq
RRBS
primary cell
pancreatic alpha cell
10
13
42
exocrine cell
39
pancreatic beta cell
10
13
11
pancreatic endocrine cell
23
pancreatic ductal cell
7
13
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