Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
16
pCHi-C
8
snATAC-seq
1
Hi-C
Assay category
117
DNA binding
98
Transcription
8
DNA accessibility
1
3D chromatin structure
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
45
May, 2020
8
January, 2021
1
March, 2023
Available data
215
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
1
hic
Organism
240
Homo sapiens
Biosample type
312
tissue
240
primary cell
54
in vitro differentiated cells
47
cell line
2
stem cell
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
204
T1D
35
AMP
1
ITG
Genome assembly (visualization)
215
hg19
181
GRCh38
Lab
AMP-T2D consortium
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
lab.title!
AMP-T2D consortium
Klaus Kaestner, Upenn
organ_slims!
heart
BIOSAMPLE
ASSAY
240 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
Hi-C
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 32 more…
See all biosamples
Download