Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ChIP-seq
240
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
23
DNase-seq
17
pCHi-C
8
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
429
Transcription
278
DNA accessibility
252
DNA binding
56
DNA methylation
6
3D chromatin structure
Target of assay
217
histone
217
histone modification
112
broad histone mark
105
narrow histone mark
30
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
49
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
25
July, 2019
12
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
574
bigWig
565
bam
403
fastq
268
bed narrowPeak
263
tsv
153
zippedFastqFolder
96
tagAlign
86
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
24
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1038
Homo sapiens
Biosample type
2281
tissue
1038
primary cell
379
in vitro differentiated cells
193
cell line
8
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
509
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
585
hg19
503
GRCh38
Lab
474
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
52
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Anna Gloyn, Oxford
organ_slims!
liver
thymus
vasculature
BIOSAMPLE
ASSAY
1038 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 83 more…
See all biosamples
Download