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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
ChIP-seq
188
ATAC-seq
187
single cell RNA-seq
167
total RNA-seq
56
snATAC-seq
47
WGBS
22
DNase-seq
17
pCHi-C
8
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
356
Transcription
266
DNA accessibility
251
DNA binding
56
DNA methylation
6
3D chromatin structure
Target of assay
218
histone
218
histone modification
113
broad histone mark
105
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
43
June, 2019
23
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
576
bigWig
567
bam
327
fastq
268
bed narrowPeak
254
tsv
153
zippedFastqFolder
100
tagAlign
82
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
26
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
952
Homo sapiens
Biosample type
2276
tissue
952
primary cell
590
cell line
377
in vitro differentiated cells
10
stem cell
Organ
369
epithelium
309
pancreas
39
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
499
AMP
248
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
589
hg19
506
GRCh38
Lab
464
AMP-T2D consortium
248
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Karen Mohlke, UNC
month_released!
February, 2023
organ_slims!
heart
vasculature
BIOSAMPLE
ASSAY
952 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
15
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
35
12
25
31
1
pancreatic beta cell
13
23
12
11
16
1
CD8-positive, alpha-beta T cell
33
2
4
1
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