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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
total RNA-seq
216
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
8
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
434
Transcription
282
DNA accessibility
216
DNA binding
56
DNA methylation
10
3D chromatin structure
Target of assay
191
histone
191
histone modification
102
broad histone mark
89
narrow histone mark
20
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
34
October, 2019
28
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
556
bigWig
538
bam
351
fastq
268
tsv
253
bed narrowPeak
153
zippedFastqFolder
88
tagAlign
81
bigBed narrowPeak
36
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1015
Homo sapiens
Biosample type
2277
tissue
1015
primary cell
662
cell line
326
in vitro differentiated cells
10
stem cell
Organ
377
epithelium
305
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
486
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
569
hg19
483
GRCh38
Lab
451
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
lab.title!
Katalin Susztak, Upenn
month_released!
August, 2017
organ_slims!
musculature of body
ureter
BIOSAMPLE
ASSAY
1015 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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