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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ChIP-seq
154
total RNA-seq
151
ATAC-seq
102
single cell RNA-seq
28
DNase-seq
17
pCHi-C
9
RRBS
5
Hi-C
1
DNAme array
1
small RNA-seq
Assay category
257
Transcription
252
DNA binding
179
DNA accessibility
10
DNA methylation
5
3D chromatin structure
Target of assay
214
histone
214
histone modification
109
broad histone mark
105
narrow histone mark
31
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
73
September, 2018
59
August, 2017
48
July, 2018
44
June, 2019
43
April, 2018
28
July, 2019
13
October, 2019
12
February, 2023
9
November, 2017
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
577
bigWig
576
bam
273
bed narrowPeak
262
tsv
240
fastq
100
tagAlign
87
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
1
bed bed3
1
hic
Organism
720
Homo sapiens
Biosample type
2687
tissue
720
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
254
epithelium
194
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
523
AMP
196
T1D
1
ITG
Genome assembly (visualization)
596
hg19
503
GRCh38
Lab
488
AMP-T2D consortium
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Klaus Kaestner, Upenn
month_released!
January, 2021
organ_slims!
musculature of body
vein
BIOSAMPLE
ASSAY
720 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic beta cell
13
10
7
12
pancreatic alpha cell
13
10
6
12
CD8-positive, alpha-beta T cell
33
4
2
1
pancreatic ductal cell
13
4
4
10
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