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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
142
total RNA-seq
99
single cell RNA-seq
42
ChIP-seq
31
DNase-seq
17
pCHi-C
8
snATAC-seq
3
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
241
Transcription
191
DNA accessibility
42
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
88
May, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
July, 2019
21
August, 2017
13
October, 2019
12
February, 2023
8
January, 2021
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
February, 2021
3
June, 2018
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
388
bam
351
bigWig
246
tsv
167
fastq
79
bed narrowPeak
62
bigBed narrowPeak
33
bed broadPeak
33
bigBed broadPeak
30
bed bed3+
3
hic
2
csv
2
tagAlign
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
496
Homo sapiens
Biosample type
2073
tissue
624
cell line
496
primary cell
282
in vitro differentiated cells
8
stem cell
Organ
175
epithelium
136
pancreas
23
connective tissue
19
kidney
15
vasculature
11
blood vessel
11
brain
9
liver
8
blood
8
bodily fluid
7
vein
6
heart
3
eye
3
musculature of body
1
bone element
1
bone marrow
Project
375
AMP
120
T1D
1
ITG
Genome assembly (visualization)
364
hg19
310
GRCh38
Lab
370
AMP-T2D consortium
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
1
audit script error
lab.title!
Klaus Kaestner, Upenn
month_released!
July, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
496 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
DNase-seq
pCHi-C
snATAC-seq
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
15
54
1
1
pancreatic beta cell
7
10
12
6
pancreatic alpha cell
6
10
12
6
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
CD4-positive, alpha-beta memory T cell
22
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